|
LAB MEMBERS
|
Forthcoming (Bold denotes Mallarino Lab members)
AJ Lea, IV Caldas, KM Garske, J Echwa, M Gurven, C Handley, J Kahumbu, Kamau, P Kinyua, F Lotukoi, A Lopurudoi, S Lowasa, R Mallarino, D Martins, PW Messer, C Miano, B Muhoya, J Peng, T Phung, JD Rabinowitz, A Roichman, R Siford, A Stone, AM,Taravella Oill, S Mathew, MA Wilson, JF Ayroles.
Adaptations to water stress and pastoralism in the Turkana of northwest Kenya. Biorxiv (in revision)
Peer reviewed (Bold denotes Mallarino Lab members)
Staps M, Miller P, Tarnita CE and Mallarino R. Development shapes the evolutionary diversification of rodent stripe patterns. Proceedings of the National Academy of Sciences USA, in press.
Johnson MR, Li S, Guerrero-Juarez C, Miller P, Brack BJ, Mereby SA, Moreno JA, Feigin C, Gaska J, Nie Q, Rivera-Perez J, Ploss A, Shvartsman SY, and Mallarino R. Sfrp2 is a multifunctional regulator of rodent color patterns. Nature Ecology and Evolution, in press (Biorxiv).
Li S, Mereby S, Rothstein M, Johnson MR, Brack B, and Mallarino R (2023). TIGER: Single-step in vivo genome editing in a non-traditional rodent species. Cell Reports 42: 112980. Download PDF
Richardson R, Feigin C, Bano-Otalora B, Johnson MR, Allen AE, Park J, McDowell R, Mereby SA, Lucas RJ, Mallarino R (2023). The genomic basis of temporal niche evolution in a diurnal rodent. Current Biology 33, 1-10. Download PDF
C Kratochwil and R Mallarino (2023). Mechanisms underlying the formation and evolution of vertebrate color patterns. Annual Review of Genetics 57:4.1-4.22. Download PDF
Rogers FD, Peña CJ, and Mallarino R (2023). African striped mice (Rhabdomys pumilio) as a neurobehavioral model for male parental care. Hormones and Behavior 152, 105364. Download PDF
Feigin C, Moreno JA, Ramos R, Mereby SA, Alivisatos A, Wang W, van Amerongen R, Camacho J, Rasweiler JJ, Behringer R, Ostrow R, Plikus MV, and Mallarino R (2023). Convergent deployment of ancestral programs during the evolution of mammalian flight membranes. Science Advances 9, eade7511. Download PDF
Wooldridge TB, Kautt AF, Lassance JM, McFadden S, Domingues VS, Mallarino R, and Hoekstra HE (2022). An enhancer of Agouti contributes to parallel evolution of cryptically colored beach mice. Proceedings of the National Academy of Sciences USA 119 e2202862119. Download PDF.
Feigin C, Li S, Moreno J, Mallarino R (2022). The GRN concept as a guide for evolutionary developmental biology. Journal of Experimental Zoology B Molecular and Developmental Evolution. DOI: 10.1002/jez.b.23132. Download PDF.
Mallarino R, Manceau M, Kronforst M. (2021). Editorial: EvoDevo of color pattern formation. Front. Ecol. Evol. 9: 727516. Download PDF.
Johnson MR, Mallarino R. Genome-wide profiling of cis-regulatory elements in mammalian skin. Methods in Molecular Biology: Tissue Morphogenesis, in press.
Caro T, Mallarino R (2019). Coloration in mammals. Trends in Ecology and Evolution; https://doi.org/10.1016/j.tree.2019.12.008. Download PDF.
Barret RDH*, Laurent S*, Mallarino R*, Xu C, Pfeiffer S, Jensen J, Hoekstra HE (2019). Linking a mutation to survival in wild mice. Science, 636:499-504. Download PDF.
*joint first authors
Johnson MR, Barsh GS, Mallarino R (2019). Periodic patterns in Rodentia: Development and Evolution. Journal of Experimental Dermatology, DOI: 10.1111/exd.13852. Download PDF
Kocher S, Mallarino R, Rubin B, Yu D, Hoekstra HE, Pierce N (2018). The genetic basis of a social polymorphism in halictid bees. Nature Communications, 9: 4338. Download PDF
Feigin CY, Mallarino R (2018). Phenotypic diversity: Setting the bar. eLife, 7:e39068. Download PDF
Mallarino R, Pillay N, Hoekstra HE, Schradin (2018). African striped mice. Current Biology, 28:R299-R301. Download PDF
Mallarino R, Henegar C, Mirasierra M, Manceau M, Shradin C, Vallejo M, Beronja S, Barsh GS, Hoekstra HE (2016). Developmental mechanisms of stripe patterns in rodents. Nature, 539: 518-523. Download PDF
Mallarino R, Hoekstra HE, Manceau M (2016). Non-model rodents for evolutionary developmental genetics. Current Opinion in Genetics and Development, 39:182-186. Download PDF
Mallarino R, Linden TA, Linnen CR, Hoesktra HE (2016). The role of Agouti isoforms in the evolution of cryptic light coloration in Peromyscus mice. Molecular Ecology, 26:10.1111/mec.13663. Download PDF
Mallarino R and Abzhanov A (2012). Paths less traveled: Evo-Devo approaches to investigating animal morphological evolution. Annual Review of Cell and Developmental Biology. 28:743-63. Download PDF
Mallarino R, Campas O, Fritz J, Burns K, Weeks O, Brenner M, Abzhanov A (2012). Closely related bird species demonstrate flexibility between beak morphology and underlying developmental programs. Proceedings of the National Academy of Sciences USA 109:16222-7. Download PDF
Mallarino R, Herrel A, Kuo W, Grant BR, Grant PR, Abzhanov A (2011). Two developmental modules establish 3D beak-shape variation in Darwin’s finches. Proceedings of the National Academy of Sciences USA 108:4057-62. Download PDF
Manceau M, Domingues V, Mallarino R, Hoekstra HE (2011). The developmental role of Agouti in color pattern evolution. Science 331:1062-5. Download PDF
Campas O, Mallarino R, Herrel A, Abzhanov A, Brenner MP (2010). Scaling and shear transformations capture beak shape variation in Darwin’s Finches. Proceedings of the National Academy of Sciences USA 107:3356-60. Download PDF
Jiggins CD, Mallarino R, Willmott KW, Bermingham E (2006). The phylogenetic pattern of speciation and wing pattern change in neotropical Ithomia butterflies (Lepidoptera; Nymphalidae). Evolution 60:1454-66. Download PDF
Whinnett A, Zimmermann A, Willmott KR, Herrera N, Mallarino R, Simpson F, Joron, M, Lamas G, Mallet J (2005). Strikingly variable divergence times inferred across an Amazonian butterfly “suture zone”. Proceedings of the Royal Society of London B. 272:2525-33. Download PDF
Mallarino R, Bermingham E, Willmott KR, Whinnett A, Jiggins CD (2005). Molecular systematics of the butterfly genus Ithomia (Lepidoptera: Ithomiinae): a composite phylogenetic hypothesis based on seven genes. Molecular Phylogenetics and Evolution 34:625-44. Download PDF
AJ Lea, IV Caldas, KM Garske, J Echwa, M Gurven, C Handley, J Kahumbu, Kamau, P Kinyua, F Lotukoi, A Lopurudoi, S Lowasa, R Mallarino, D Martins, PW Messer, C Miano, B Muhoya, J Peng, T Phung, JD Rabinowitz, A Roichman, R Siford, A Stone, AM,Taravella Oill, S Mathew, MA Wilson, JF Ayroles.
Adaptations to water stress and pastoralism in the Turkana of northwest Kenya. Biorxiv (in revision)
Peer reviewed (Bold denotes Mallarino Lab members)
Staps M, Miller P, Tarnita CE and Mallarino R. Development shapes the evolutionary diversification of rodent stripe patterns. Proceedings of the National Academy of Sciences USA, in press.
Johnson MR, Li S, Guerrero-Juarez C, Miller P, Brack BJ, Mereby SA, Moreno JA, Feigin C, Gaska J, Nie Q, Rivera-Perez J, Ploss A, Shvartsman SY, and Mallarino R. Sfrp2 is a multifunctional regulator of rodent color patterns. Nature Ecology and Evolution, in press (Biorxiv).
Li S, Mereby S, Rothstein M, Johnson MR, Brack B, and Mallarino R (2023). TIGER: Single-step in vivo genome editing in a non-traditional rodent species. Cell Reports 42: 112980. Download PDF
Richardson R, Feigin C, Bano-Otalora B, Johnson MR, Allen AE, Park J, McDowell R, Mereby SA, Lucas RJ, Mallarino R (2023). The genomic basis of temporal niche evolution in a diurnal rodent. Current Biology 33, 1-10. Download PDF
C Kratochwil and R Mallarino (2023). Mechanisms underlying the formation and evolution of vertebrate color patterns. Annual Review of Genetics 57:4.1-4.22. Download PDF
Rogers FD, Peña CJ, and Mallarino R (2023). African striped mice (Rhabdomys pumilio) as a neurobehavioral model for male parental care. Hormones and Behavior 152, 105364. Download PDF
Feigin C, Moreno JA, Ramos R, Mereby SA, Alivisatos A, Wang W, van Amerongen R, Camacho J, Rasweiler JJ, Behringer R, Ostrow R, Plikus MV, and Mallarino R (2023). Convergent deployment of ancestral programs during the evolution of mammalian flight membranes. Science Advances 9, eade7511. Download PDF
Wooldridge TB, Kautt AF, Lassance JM, McFadden S, Domingues VS, Mallarino R, and Hoekstra HE (2022). An enhancer of Agouti contributes to parallel evolution of cryptically colored beach mice. Proceedings of the National Academy of Sciences USA 119 e2202862119. Download PDF.
Feigin C, Li S, Moreno J, Mallarino R (2022). The GRN concept as a guide for evolutionary developmental biology. Journal of Experimental Zoology B Molecular and Developmental Evolution. DOI: 10.1002/jez.b.23132. Download PDF.
Mallarino R, Manceau M, Kronforst M. (2021). Editorial: EvoDevo of color pattern formation. Front. Ecol. Evol. 9: 727516. Download PDF.
Johnson MR, Mallarino R. Genome-wide profiling of cis-regulatory elements in mammalian skin. Methods in Molecular Biology: Tissue Morphogenesis, in press.
Caro T, Mallarino R (2019). Coloration in mammals. Trends in Ecology and Evolution; https://doi.org/10.1016/j.tree.2019.12.008. Download PDF.
Barret RDH*, Laurent S*, Mallarino R*, Xu C, Pfeiffer S, Jensen J, Hoekstra HE (2019). Linking a mutation to survival in wild mice. Science, 636:499-504. Download PDF.
*joint first authors
Johnson MR, Barsh GS, Mallarino R (2019). Periodic patterns in Rodentia: Development and Evolution. Journal of Experimental Dermatology, DOI: 10.1111/exd.13852. Download PDF
Kocher S, Mallarino R, Rubin B, Yu D, Hoekstra HE, Pierce N (2018). The genetic basis of a social polymorphism in halictid bees. Nature Communications, 9: 4338. Download PDF
Feigin CY, Mallarino R (2018). Phenotypic diversity: Setting the bar. eLife, 7:e39068. Download PDF
Mallarino R, Pillay N, Hoekstra HE, Schradin (2018). African striped mice. Current Biology, 28:R299-R301. Download PDF
Mallarino R, Henegar C, Mirasierra M, Manceau M, Shradin C, Vallejo M, Beronja S, Barsh GS, Hoekstra HE (2016). Developmental mechanisms of stripe patterns in rodents. Nature, 539: 518-523. Download PDF
Mallarino R, Hoekstra HE, Manceau M (2016). Non-model rodents for evolutionary developmental genetics. Current Opinion in Genetics and Development, 39:182-186. Download PDF
Mallarino R, Linden TA, Linnen CR, Hoesktra HE (2016). The role of Agouti isoforms in the evolution of cryptic light coloration in Peromyscus mice. Molecular Ecology, 26:10.1111/mec.13663. Download PDF
Mallarino R and Abzhanov A (2012). Paths less traveled: Evo-Devo approaches to investigating animal morphological evolution. Annual Review of Cell and Developmental Biology. 28:743-63. Download PDF
Mallarino R, Campas O, Fritz J, Burns K, Weeks O, Brenner M, Abzhanov A (2012). Closely related bird species demonstrate flexibility between beak morphology and underlying developmental programs. Proceedings of the National Academy of Sciences USA 109:16222-7. Download PDF
Mallarino R, Herrel A, Kuo W, Grant BR, Grant PR, Abzhanov A (2011). Two developmental modules establish 3D beak-shape variation in Darwin’s finches. Proceedings of the National Academy of Sciences USA 108:4057-62. Download PDF
Manceau M, Domingues V, Mallarino R, Hoekstra HE (2011). The developmental role of Agouti in color pattern evolution. Science 331:1062-5. Download PDF
Campas O, Mallarino R, Herrel A, Abzhanov A, Brenner MP (2010). Scaling and shear transformations capture beak shape variation in Darwin’s Finches. Proceedings of the National Academy of Sciences USA 107:3356-60. Download PDF
Jiggins CD, Mallarino R, Willmott KW, Bermingham E (2006). The phylogenetic pattern of speciation and wing pattern change in neotropical Ithomia butterflies (Lepidoptera; Nymphalidae). Evolution 60:1454-66. Download PDF
Whinnett A, Zimmermann A, Willmott KR, Herrera N, Mallarino R, Simpson F, Joron, M, Lamas G, Mallet J (2005). Strikingly variable divergence times inferred across an Amazonian butterfly “suture zone”. Proceedings of the Royal Society of London B. 272:2525-33. Download PDF
Mallarino R, Bermingham E, Willmott KR, Whinnett A, Jiggins CD (2005). Molecular systematics of the butterfly genus Ithomia (Lepidoptera: Ithomiinae): a composite phylogenetic hypothesis based on seven genes. Molecular Phylogenetics and Evolution 34:625-44. Download PDF
Illustration by: Caroline Hu (www.hudrewthis.com)